Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nucleotide exchange factor grpe | APT59_RS02250 | Not Available | Positive | 488872 - 489438 | 20672.4 |
| molecular chaperone dnak | APT59_RS02255 | Not Available | Positive | 489532 - 491460 | 68795.5 |
| molecular chaperone dnaj | APT59_RS02260 | Not Available | Positive | 491573 - 492706 | 40269.5 |
| 4-hydroxy-tetrahydrodipicolinate reductase | APT59_RS02265 | Not Available | Positive | 492761 - 493567 | 28645.6 |
| glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit | APT59_RS02270 | Not Available | Positive | 493744 - 494880 | 40719.6 |
| leucine efflux protein leue | APT59_RS02275 | Not Available | Positive | 494905 - 495558 | 23490.1 |
| carbamoyl-phosphate synthase large subunit | APT59_RS02280 | Not Available | Positive | 495580 - 498801 | 117545.0 |
| transcription elongation factor grea | APT59_RS02285 | Not Available | Positive | 498798 - 499274 | 17332.6 |
| hypothetical protein | APT59_RS22650 | Not Available | Positive | 499494 - 499703 | 7415.31 |
| ribosome assembly rna-binding protein yhby | APT59_RS02295 | Not Available | Negative | 499691 - 500002 | 11665.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
