Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| excinuclease abc subunit uvra | APT59_RS02200 | Not Available | Negative | 478991 - 481825 | 104965.0 |
| mfs transporter | APT59_RS02205 | Not Available | Positive | 482095 - 483483 | 48864.2 |
| single-stranded dna-binding protein | APT59_RS02210 | Not Available | Positive | 483509 - 484063 | 20297.2 |
| Tmrna,resume consensus sequence (at 88): tatagttgccaacgacga | Not Available | Not Available | Positive | 484118 - 484470 | Not Available |
| ssra-binding protein smpb | APT59_RS02220 | Not Available | Negative | 484552 - 485028 | 17793.6 |
| type ii toxin-antitoxin system rata family toxin | APT59_RS02225 | Not Available | Positive | 485201 - 485635 | 15894.0 |
| rnfh family protein | APT59_RS02230 | Not Available | Positive | 485628 - 485933 | 11432.9 |
| outer membrane protein assembly factor bame | APT59_RS02235 | Not Available | Negative | 485941 - 486477 | 19260.9 |
| ferric iron uptake transcriptional regulator | APT59_RS02240 | Not Available | Positive | 486572 - 486976 | 15284.2 |
| dna repair protein recn | APT59_RS02245 | Not Available | Negative | 487038 - 488705 | 61376.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
