Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4124 domain-containing protein | APT59_RS02150 | Not Available | Negative | 467512 - 467976 | 17255.1 |
| acetolactate synthase 3 large subunit | APT59_RS02155 | Not Available | Positive | 468374 - 470098 | 62980.4 |
| acetolactate synthase small subunit | APT59_RS02160 | Not Available | Positive | 470101 - 470592 | 17701.4 |
| ketol-acid reductoisomerase | APT59_RS02165 | Not Available | Positive | 470618 - 471634 | 36301.4 |
| cdp-diacylglycerol--serine o-phosphatidyltransferase | APT59_RS02170 | Not Available | Positive | 471799 - 472653 | 30440.2 |
| 16s ribosomal rna | Not Available | Not Available | Positive | 473219 - 474755 | Not Available |
| Trna-ile | Not Available | Not Available | Positive | 474853 - 474929 | Not Available |
| Trna-ala | Not Available | Not Available | Positive | 474936 - 475011 | Not Available |
| 23s ribosomal rna | Not Available | Not Available | Positive | 475306 - 478198 | Not Available |
| 5s ribosomal rna | Not Available | Not Available | Positive | 478358 - 478473 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
