Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pyridoxal phosphate-dependent aminotransferase | APT59_RS02100 | Not Available | Positive | 456174 - 457349 | 42431.6 |
| dna/rna nuclease sfsa | APT59_RS02105 | Not Available | Positive | 457346 - 458053 | 25498.8 |
| nupc/nupg family nucleoside cnt transporter | APT59_RS02110 | Not Available | Positive | 458160 - 459422 | 44066.2 |
| cytidine deaminase | APT59_RS02115 | Not Available | Positive | 459494 - 459907 | 14327.2 |
| thymidine phosphorylase | APT59_RS02120 | Not Available | Positive | 459920 - 461230 | 45957.4 |
| cyclic nucleotide-binding domain-containing protein | APT59_RS02125 | Not Available | Negative | 461411 - 462223 | 29760.8 |
| bifunctional aminoglycoside phosphotransferase/atp-binding protein | APT59_RS02130 | Not Available | Negative | 462354 - 463901 | 56655.6 |
| penicillin-binding protein 1b | APT59_RS02135 | Not Available | Positive | 464054 - 466396 | 85405.3 |
| m48 family metallopeptidase | APT59_RS02140 | Not Available | Positive | 466408 - 467184 | 25874.4 |
| yqcc family protein | APT59_RS02145 | Not Available | Positive | 467184 - 467510 | 12261.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
