Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| yeah/yhbh family protein | APT59_RS01900 | Not Available | Negative | 409150 - 410421 | 48562.7 |
| prka family serine protein kinase | APT59_RS01905 | Not Available | Negative | 410498 - 412420 | 73668.4 |
| thiosulfate sulfurtransferase glpe | APT59_RS01910 | Not Available | Negative | 412785 - 413114 | 11979.8 |
| symmetrical bis(5'-nucleosyl)-tetraphosphatase | APT59_RS01915 | Not Available | Negative | 413111 - 413932 | 30610.8 |
| co2+/mg2+ efflux protein apag | APT59_RS01920 | Not Available | Negative | 414093 - 414479 | 13936.3 |
| 16s rrna (adenine(1518)-n(6)/adenine(1519)-n(6))- dimethyltransferase rsma | APT59_RS01925 | Not Available | Negative | 414515 - 415306 | 29197.5 |
| 4-hydroxythreonine-4-phosphate dehydrogenase pdxa | APT59_RS01930 | Not Available | Negative | 415596 - 416591 | 34860.4 |
| peptidylprolyl isomerase | APT59_RS01935 | Not Available | Negative | 416642 - 417937 | 47629.9 |
| lps-assembly protein lptd | APT59_RS01940 | Not Available | Negative | 417918 - 420722 | 104530.0 |
| aminoglycoside phosphotransferase family protein | APT59_RS01945 | Not Available | Positive | 420842 - 421864 | 38386.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
