Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-met | Not Available | Not Available | Positive | 398914 - 398990 | Not Available |
| rna polymerase sigma factor rpod | APT59_RS01855 | Not Available | Negative | 399096 - 400949 | 69885.0 |
| dna primase | APT59_RS01860 | Not Available | Negative | 401026 - 402933 | 70409.0 |
| 30s ribosomal protein s21 | APT59_RS01865 | Not Available | Negative | 403247 - 403462 | 8528.38 |
| trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex transferase subunit tsad | APT59_RS01870 | Not Available | Positive | 403668 - 404693 | 36334.0 |
| glycerol-3-phosphate 1-o-acyltransferase plsy | APT59_RS01875 | Not Available | Negative | 404739 - 405308 | 20421.9 |
| dihydroneopterin aldolase | APT59_RS01880 | Not Available | Positive | 405419 - 405772 | 13245.8 |
| 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase | APT59_RS01885 | Not Available | Positive | 405769 - 406302 | 19769.9 |
| multifunctional cca addition/repair protein | APT59_RS01890 | Not Available | Negative | 406432 - 407559 | 41287.8 |
| spovr family protein | APT59_RS01895 | Not Available | Negative | 407612 - 409153 | 60441.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
