Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acyl-coa dehydrogenase c-terminal domain-containing protein | APT59_RS01805 | Not Available | Positive | 386288 - 388057 | 63439.8 |
| yqae/pmp3 family membrane protein | APT59_RS22040 | Not Available | Positive | 388417 - 388575 | 5788.54 |
| response regulator | APT59_RS01810 | Not Available | Positive | 388834 - 392370 | 131517.0 |
| protein-glutamate o-methyltransferase cher | APT59_RS01815 | Not Available | Positive | 392374 - 393192 | 31194.5 |
| chemotaxis protein cheb | APT59_RS01820 | Not Available | Positive | 393194 - 393781 | 21038.5 |
| hybrid sensor histidine kinase/response regulator | APT59_RS01825 | Not Available | Positive | 393774 - 394970 | 44384.9 |
| nad(p)-dependent oxidoreductase | APT59_RS01830 | Not Available | Positive | 395067 - 395885 | 30096.3 |
| smp-30/gluconolactonase/lre family protein | APT59_RS01835 | Not Available | Positive | 395897 - 396775 | 31229.1 |
| acyltransferase | APT59_RS01840 | Not Available | Positive | 396948 - 398207 | 47271.8 |
| duf4337 domain-containing protein | APT59_RS01845 | Not Available | Positive | 398266 - 398847 | 21087.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
