Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Gp2, phage terminase, large subunit, putative | APT59_RS09920 | Not Available | Positive | 2149708 - 2151429 | 64286.6 |
| Head portal protein | APT59_RS09925 | Not Available | Positive | 2151429 - 2152694 | 46480.5 |
| Head maturation protease | APT59_RS09930 | Not Available | Positive | 2152712 - 2153374 | 23482.9 |
| Major capsid protein | APT59_RS09935 | Not Available | Positive | 2153385 - 2154551 | 42165.0 |
| hypothetical protein | APT59_RS09940 | Not Available | Positive | 2154590 - 2154784 | 7204.41 |
| Head-tail connector i | APT59_RS09945 | Not Available | Positive | 2154781 - 2155131 | 12853.2 |
| Putative head-tail adaptor | APT59_RS09950 | Not Available | Positive | 2155112 - 2155450 | 12317.9 |
| Hypothetical protein | APT59_RS09955 | Not Available | Positive | 2155453 - 2155887 | 16359.7 |
| Hypothetical protein | APT59_RS09960 | Not Available | Positive | 2155887 - 2156252 | 13110.3 |
| Putative major tail protein | APT59_RS09965 | Not Available | Positive | 2156316 - 2156810 | 16975.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
