Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter substrate-binding protein | APT59_RS01705 | Not Available | Positive | 367810 - 368517 | 26831.2 |
| abc transporter substrate-binding protein | APT59_RS01710 | Not Available | Positive | 368567 - 369328 | 28214.1 |
| divergent polysaccharide deacetylase family protein | APT59_RS01715 | Not Available | Negative | 369353 - 370114 | 27053.7 |
| s41 family peptidase | APT59_RS01720 | Not Available | Negative | 370111 - 371454 | 46934.1 |
| murein hydrolase activator envc | APT59_RS01725 | Not Available | Negative | 371484 - 372767 | 47464.2 |
| nad(p)-dependent oxidoreductase | APT59_RS01730 | Not Available | Negative | 372901 - 373512 | 21568.7 |
| rhodanese-like domain-containing protein | APT59_RS01735 | Not Available | Positive | 373695 - 374114 | 14814.1 |
| glutaredoxin 3 | APT59_RS01740 | Not Available | Positive | 374155 - 374409 | 9375.23 |
| protein-export chaperone secb | APT59_RS01745 | Not Available | Positive | 374437 - 374901 | 17066.3 |
| eama family transporter rard | APT59_RS01750 | Not Available | Negative | 374975 - 375895 | 34095.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
