Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-phe | Not Available | Not Available | Positive | 358651 - 358726 | Not Available |
| oxidative damage protection protein | APT59_RS01660 | Not Available | Negative | 359016 - 359288 | 10597.6 |
| a/g-specific adenine glycosylase | APT59_RS01665 | Not Available | Negative | 359285 - 360349 | 39104.2 |
| asma family protein | APT59_RS01670 | Not Available | Negative | 360346 - 362571 | 79800.0 |
| ofa family mfs transporter | APT59_RS01675 | Not Available | Positive | 362868 - 364532 | 59532.8 |
| imidazoleglycerol-phosphate dehydratase hisb | APT59_RS01680 | Not Available | Positive | 364676 - 365269 | 21911.3 |
| imidazole glycerol phosphate synthase subunit hish | APT59_RS01685 | Not Available | Positive | 365269 - 365907 | 23384.9 |
| duf2164 domain-containing protein | APT59_RS01690 | Not Available | Positive | 365907 - 366164 | 9862.83 |
| 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase | APT59_RS01695 | Not Available | Positive | 366196 - 366933 | 25939.2 |
| imidazole glycerol phosphate synthase subunit hisf | APT59_RS01700 | Not Available | Positive | 366944 - 367726 | 27555.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
