Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | APT59_RS01605 | Not Available | Positive | 351123 - 351314 | 7338.63 |
| yifb family mg chelatase-like aaa atpase | APT59_RS01610 | Not Available | Negative | 351311 - 352801 | 52473.5 |
| accessory factor ubik family protein | APT59_RS01615 | Not Available | Negative | 352864 - 353163 | 10813.8 |
| p-ii family nitrogen regulator | APT59_RS01620 | Not Available | Positive | 353554 - 353892 | 12286.9 |
| ammonium transporter | APT59_RS01625 | Not Available | Positive | 353941 - 355281 | 46349.3 |
| secondary thiamine-phosphate synthase enzyme yjbq | APT59_RS01630 | Not Available | Positive | 355454 - 355873 | 15582.4 |
| transcriptional regulator suta | APT59_RS01635 | Not Available | Positive | 355944 - 356276 | 12037.4 |
| hypothetical protein | APT59_RS01640 | Not Available | Negative | 357087 - 357299 | 7722.55 |
| cupin domain-containing protein | APT59_RS01645 | Not Available | Positive | 357604 - 357942 | 12175.7 |
| hypothetical protein | APT59_RS22340 | Not Available | Negative | 358016 - 358369 | 12844.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
