Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dinb family protein | APT59_RS01360 | Not Available | Negative | 296785 - 297336 | 20205.3 |
| glycosyl hydrolase 53 family protein | APT59_RS01365 | Not Available | Positive | 297482 - 298468 | 37520.9 |
| cellulase family glycosylhydrolase | APT59_RS01370 | Not Available | Positive | 298751 - 301366 | 93870.1 |
| 2-keto-3-deoxygluconate transporter | APT59_RS01375 | Not Available | Positive | 302356 - 303354 | 33593.1 |
| dna helicase rep | APT59_RS01380 | Not Available | Negative | 303587 - 305599 | 76642.2 |
| hypothetical protein | APT59_RS01385 | Not Available | Negative | 305659 - 306351 | 25100.7 |
| flavin reductase family protein | APT59_RS01390 | Not Available | Positive | 306527 - 307111 | 21027.2 |
| methyl-accepting chemotaxis protein | APT59_RS01395 | Not Available | Negative | 307151 - 309076 | 68201.3 |
| arc family dna-binding protein | APT59_RS01400 | Not Available | Negative | 309211 - 309540 | 12553.1 |
| lyse family translocator | APT59_RS01405 | Not Available | Negative | 309572 - 310213 | 23043.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
