Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Hypothetical protein | APT59_RS09875 | Not Available | Positive | 2145368 - 2145667 | 10935.1 |
| Hypothetical protein | APT59_RS09880 | Not Available | Positive | 2145670 - 2146233 | 21038.3 |
| Com translational regulator | APT59_RS22160 | Not Available | Positive | 2146524 - 2146712 | 6878.41 |
| putidacin l1 family lectin-like bacteriocin | APT59_RS09885 | Not Available | Positive | 2146718 - 2147554 | 30722.8 |
| Hypothetical protein | APT59_RS09890 | Not Available | Positive | 2147617 - 2147991 | 13115.1 |
| Hypothetical protein | APT59_RS09895 | Not Available | Positive | 2147995 - 2148318 | 11968.8 |
| hypothetical protein | APT59_RS09900 | Not Available | Positive | 2148315 - 2148545 | 8801.51 |
| hypothetical protein | APT59_RS09905 | Not Available | Positive | 2148542 - 2148727 | 6829.97 |
| Putative class i holin | APT59_RS09910 | Not Available | Positive | 2148727 - 2149092 | 13450.0 |
| Putative terminase (small subunit) | APT59_RS09915 | Not Available | Positive | 2149223 - 2149708 | 17267.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
