Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| penicillin-binding protein 2 | APT59_RS01260 | Not Available | Negative | 275914 - 277617 | 61299.9 |
| ykgj family cysteine cluster protein | APT59_RS01265 | Not Available | Positive | 277747 - 278061 | 12015.2 |
| ykgj family cysteine cluster protein | APT59_RS01270 | Not Available | Negative | 278399 - 278803 | 15356.8 |
| xanthine phosphoribosyltransferase | APT59_RS01275 | Not Available | Negative | 278807 - 279379 | 20428.8 |
| methyl-accepting chemotaxis protein | APT59_RS01280 | Not Available | Positive | 279560 - 281617 | 73091.0 |
| hypothetical protein | APT59_RS01285 | Not Available | Negative | 281670 - 281936 | 9247.87 |
| curlin | APT59_RS01290 | Not Available | Negative | 282026 - 283138 | 39430.2 |
| dethiobiotin synthase | APT59_RS01295 | Not Available | Negative | 283215 - 283886 | 22766.8 |
| malonyl-acp o-methyltransferase bioc | APT59_RS01300 | Not Available | Negative | 283892 - 284689 | 29234.2 |
| alpha/beta fold hydrolase | APT59_RS01305 | Not Available | Negative | 284670 - 285395 | 26283.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
