Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acyltransferase family protein | APT59_RS01210 | Not Available | Negative | 266636 - 267697 | 39707.6 |
| ycii family protein | APT59_RS01215 | Not Available | Negative | 267998 - 268294 | 10758.8 |
| aliphatic sulfonate abc transporter substrate-binding protein | APT59_RS01220 | Not Available | Positive | 268493 - 269446 | 33582.6 |
| zinc abc transporter permease subunit znub | APT59_RS01225 | Not Available | Negative | 269464 - 270249 | 27525.0 |
| zinc abc transporter atp-binding protein znuc | APT59_RS01230 | Not Available | Negative | 270242 - 271012 | 27573.6 |
| fur family transcriptional regulator | APT59_RS01235 | Not Available | Negative | 271009 - 271494 | 17575.1 |
| zinc abc transporter substrate-binding protein znua | APT59_RS01240 | Not Available | Positive | 271560 - 272561 | 35785.4 |
| response regulator transcription factor | APT59_RS01245 | Not Available | Positive | 273079 - 273756 | 25631.9 |
| atp-binding protein | APT59_RS01250 | Not Available | Positive | 273753 - 275147 | 52386.6 |
| thioesterase domain-containing protein | APT59_RS01255 | Not Available | Positive | 275209 - 275661 | 17150.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
