Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| k+/h+ antiporter subunit f | APT59_RS01155 | Not Available | Negative | 252094 - 252363 | 9664.39 |
| na+/h+ antiporter subunit e | APT59_RS01160 | Not Available | Negative | 252348 - 252845 | 18432.3 |
| monovalent cation/h+ antiporter subunit d | APT59_RS01165 | Not Available | Negative | 252842 - 254341 | 52536.3 |
| na+/h+ antiporter subunit c | APT59_RS01170 | Not Available | Negative | 254338 - 254667 | 11706.8 |
| monovalent cation/h+ antiporter subunit a | APT59_RS01175 | Not Available | Negative | 254669 - 257476 | 100215.0 |
| efflux transporter outer membrane subunit | APT59_RS01180 | Not Available | Negative | 257908 - 259341 | 51342.5 |
| efflux rnd transporter permease subunit | APT59_RS01185 | Not Available | Negative | 259338 - 262514 | 114457.0 |
| efflux rnd transporter periplasmic adaptor subunit | APT59_RS01190 | Not Available | Negative | 262674 - 263891 | 43588.9 |
| lysr family transcriptional regulator | APT59_RS01200 | Not Available | Negative | 264489 - 265409 | 33973.1 |
| zinc-dependent alcohol dehydrogenase family protein | APT59_RS01205 | Not Available | Positive | 265559 - 266578 | 36626.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
