Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aldo/keto reductase | APT59_RS01105 | Not Available | Positive | 241213 - 242043 | 30705.6 |
| glutamate/aspartate:proton symporter gltp | APT59_RS01110 | Not Available | Positive | 242355 - 243704 | 47898.0 |
| nad-dependent epimerase/dehydratase family protein | APT59_RS01115 | Not Available | Negative | 243756 - 244601 | 30635.4 |
| hydrogen peroxide-inducible genes activator | APT59_RS01120 | Not Available | Positive | 244753 - 245685 | 34573.1 |
| atp-dependent dna helicase recg | APT59_RS01125 | Not Available | Positive | 245682 - 247757 | 76501.7 |
| aminoacyl-trna deacylase and hdod domain-containing protein | APT59_RS01130 | Not Available | Positive | 247833 - 249227 | 51270.1 |
| 50s ribosomal protein l33 | APT59_RS01135 | Not Available | Negative | 249326 - 249499 | 6751.49 |
| 50s ribosomal protein l28 | APT59_RS01140 | Not Available | Negative | 249493 - 249729 | 9119.14 |
| abc transporter substrate-binding protein | APT59_RS01145 | Not Available | Positive | 250121 - 251698 | 57745.6 |
| na+/h+ antiporter subunit g | APT59_RS01150 | Not Available | Negative | 251749 - 252078 | 11985.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
