Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| galactonate dehydratase | APT59_RS01055 | Not Available | Positive | 229603 - 230751 | 42698.0 |
| mfs transporter | APT59_RS01060 | Not Available | Positive | 231153 - 232478 | 47681.2 |
| smp-30/gluconolactonase/lre family protein | APT59_RS01065 | Not Available | Positive | 232572 - 233624 | 37974.5 |
| sugar porter family mfs transporter | APT59_RS01070 | Not Available | Positive | 233734 - 235134 | 50600.2 |
| hypothetical protein | APT59_RS01075 | Not Available | Negative | 235179 - 235616 | 13946.5 |
| aldose 1-epimerase family protein | APT59_RS01080 | Not Available | Positive | 235849 - 237057 | 43956.0 |
| acyl-coa thioesterase | APT59_RS01085 | Not Available | Negative | 237076 - 237477 | 14431.3 |
| mfs transporter | APT59_RS01090 | Not Available | Positive | 237960 - 239273 | 46868.0 |
| formaldehyde dehydrogenase, glutathione-independent | APT59_RS01095 | Not Available | Positive | 239441 - 240640 | 41877.4 |
| hypothetical protein | APT59_RS01100 | Not Available | Positive | 240785 - 241147 | 13652.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
