Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tena family transcriptional regulator | APT59_RS01005 | Not Available | Negative | 219976 - 220659 | 24936.7 |
| amp-binding protein | APT59_RS01010 | Not Available | Negative | 220656 - 222134 | 52601.1 |
| thermostable hemolysin | APT59_RS01015 | Not Available | Negative | 222124 - 222798 | 24191.3 |
| hypothetical protein | APT59_RS01020 | Not Available | Positive | 222931 - 223146 | 7404.12 |
| atp-binding protein | APT59_RS01025 | Not Available | Negative | 223143 - 224894 | 63587.2 |
| phosphate regulon sensor histidine kinase phor | APT59_RS01030 | Not Available | Negative | 224950 - 226239 | 47331.6 |
| phosphate regulon transcriptional regulator phob | APT59_RS01035 | Not Available | Negative | 226282 - 226971 | 25757.1 |
| iclr family transcriptional regulator | APT59_RS01040 | Not Available | Positive | 227131 - 227925 | 28213.9 |
| 2-dehydro-3-deoxygalactonokinase | APT59_RS01045 | Not Available | Positive | 227922 - 228875 | 33655.4 |
| 2-dehydro-3-deoxy-6-phosphogalactonate aldolase | APT59_RS01050 | Not Available | Positive | 228868 - 229488 | 21031.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
