Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sigma-54-dependent transcriptional regulator | APT59_RS00910 | Not Available | Positive | 197451 - 198968 | 53823.3 |
| ubiquinone-dependent pyruvate dehydrogenase | APT59_RS00915 | Not Available | Negative | 198987 - 200711 | 61135.8 |
| duf350 domain-containing protein | APT59_RS00920 | Not Available | Positive | 200901 - 201305 | 14210.0 |
| duf1190 domain-containing protein | APT59_RS00925 | Not Available | Positive | 201315 - 201869 | 19857.7 |
| glutathionylspermidine synthase family protein | APT59_RS00930 | Not Available | Positive | 201873 - 203027 | 44015.1 |
| glycine cleavage system protein gcvh | APT59_RS00935 | Not Available | Positive | 203277 - 203645 | 13351.5 |
| aminomethyl-transferring glycine dehydrogenase | APT59_RS00940 | Not Available | Positive | 203653 - 206508 | 102682.0 |
| glycine cleavage system aminomethyltransferase gcvt | APT59_RS00945 | Not Available | Positive | 206768 - 207877 | 39552.9 |
| glutathione s-transferase | APT59_RS00950 | Not Available | Negative | 208021 - 208635 | 22898.8 |
| lysr substrate-binding domain-containing protein | APT59_RS00955 | Not Available | Positive | 208792 - 209697 | 33572.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
