Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator beti | APT59_RS00860 | Not Available | Negative | 187793 - 188380 | 21700.3 |
| helix-turn-helix domain-containing protein | APT59_RS00865 | Not Available | Positive | 188573 - 188983 | 15120.3 |
| llm class flavin-dependent oxidoreductase | APT59_RS00870 | Not Available | Positive | 188967 - 189965 | 36218.3 |
| atp-binding protein | APT59_RS00875 | Not Available | Positive | 190224 - 192383 | 79273.6 |
| oxygen-insensitive nad(p)h nitroreductase | APT59_RS00880 | Not Available | Negative | 192483 - 193133 | 24145.6 |
| l-dopachrome tautomerase-related protein | APT59_RS00885 | Not Available | Negative | 193152 - 194300 | 40819.4 |
| zinc-binding alcohol dehydrogenase family protein | APT59_RS00890 | Not Available | Negative | 194300 - 195307 | 36282.5 |
| lysr family transcriptional regulator | APT59_RS00895 | Not Available | Positive | 195412 - 196320 | 33783.4 |
| organic hydroperoxide resistance protein | APT59_RS00900 | Not Available | Negative | 196368 - 196784 | 14107.8 |
| marr family winged helix-turn-helix transcriptional regulator | APT59_RS00905 | Not Available | Negative | 196929 - 197363 | 16494.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
