Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Hypothetical protein | APT59_RS09825 | Not Available | Positive | 2138918 - 2139202 | 10662.4 |
| Orf56 | APT59_RS22155 | Not Available | Negative | 2139321 - 2140697 | 53123.7 |
| Hypothetical protein | APT59_RS09835 | Not Available | Negative | 2141035 - 2141883 | 31816.0 |
| hypothetical protein | APT59_RS09840 | Not Available | Positive | 2141986 - 2142204 | 7738.37 |
| Hypothetical protein | APT59_RS22615 | Not Available | Positive | 2142389 - 2143189 | 29868.8 |
| Atp-binding protein | APT59_RS09850 | Not Available | Positive | 2143170 - 2143973 | 29523.8 |
| hypothetical protein | APT59_RS09855 | Not Available | Positive | 2144092 - 2144313 | 8450.97 |
| Hypothetical protein | APT59_RS09860 | Not Available | Positive | 2144310 - 2144615 | 10934.3 |
| Endodeoxyribonuclease rusa | APT59_RS09865 | Not Available | Positive | 2144612 - 2144962 | 12840.6 |
| hypothetical protein | APT59_RS09870 | Not Available | Positive | 2144959 - 2145390 | 15914.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
