Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | APT59_RS00745 | Not Available | Negative | 156156 - 157076 | 31431.3 |
| curli fiber surface-exposed nucleator csgb | APT59_RS00750 | Not Available | Negative | 157100 - 157546 | 15401.3 |
| csgg/hfab family protein | APT59_RS00755 | Not Available | Negative | 157654 - 158493 | 30106.1 |
| curli assembly protein csgf | APT59_RS00760 | Not Available | Negative | 158509 - 158916 | 14536.8 |
| curli production assembly/transport protein csge | APT59_RS00765 | Not Available | Negative | 158913 - 159296 | 14812.5 |
| luxr c-terminal-related transcriptional regulator | APT59_RS00770 | Not Available | Negative | 159293 - 159913 | 22262.0 |
| sis domain-containing protein | APT59_RS00775 | Not Available | Negative | 160145 - 161155 | 35478.8 |
| sigma-54 dependent transcriptional regulator | APT59_RS00780 | Not Available | Negative | 161270 - 162709 | 51775.0 |
| atp-binding protein | APT59_RS00785 | Not Available | Negative | 162741 - 164555 | 66995.4 |
| hypothetical protein | APT59_RS00790 | Not Available | Positive | 164753 - 164953 | 6539.75 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
