Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dipeptidase | APT59_RS00695 | Not Available | Positive | 143051 - 144028 | 36022.1 |
| duf5943 domain-containing protein | APT59_RS00700 | Not Available | Positive | 144117 - 144647 | 19961.6 |
| dimethylglycine demethylation protein dgca | APT59_RS00705 | Not Available | Positive | 144753 - 146813 | 75818.9 |
| dimethylglycine demethylation protein dgcb | APT59_RS00710 | Not Available | Positive | 146979 - 148970 | 71863.5 |
| duf4398 domain-containing protein | APT59_RS00715 | Not Available | Positive | 149140 - 150374 | 43613.9 |
| electron transfer flavoprotein subunit beta | APT59_RS00720 | Not Available | Positive | 150391 - 151164 | 26703.2 |
| dna polymerase i | APT59_RS00725 | Not Available | Negative | 151481 - 154228 | 99878.3 |
| duf2782 domain-containing protein | APT59_RS00730 | Not Available | Positive | 154483 - 154773 | 10570.8 |
| homoserine kinase | APT59_RS00735 | Not Available | Positive | 154836 - 155789 | 35235.2 |
| hypothetical protein | APT59_RS00740 | Not Available | Negative | 155827 - 156159 | 11674.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
