Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tartrate dehydrogenase | APT59_RS00645 | Not Available | Positive | 134149 - 135234 | 39525.2 |
| alpha/beta fold hydrolase | APT59_RS00650 | Not Available | Positive | 135236 - 136114 | 32321.9 |
| phosphatase pap2 family protein | APT59_RS00655 | Not Available | Positive | 136219 - 137010 | 28489.5 |
| hypothetical protein | APT59_RS00660 | Not Available | Negative | 137017 - 137268 | 8984.82 |
| alpha/beta hydrolase | APT59_RS00665 | Not Available | Negative | 137535 - 138509 | 34852.7 |
| thioesterase family protein | APT59_RS00670 | Not Available | Negative | 138521 - 138991 | 17584.1 |
| l-carnitine dehydrogenase | APT59_RS00675 | Not Available | Negative | 139000 - 139944 | 33773.4 |
| 3-keto-5-aminohexanoate cleavage protein | APT59_RS00680 | Not Available | Negative | 139941 - 140828 | 31270.8 |
| choline abc transporter substrate-binding protein | APT59_RS00685 | Not Available | Negative | 140848 - 141780 | 33619.8 |
| glxa family transcriptional regulator | APT59_RS00690 | Not Available | Positive | 141936 - 142919 | 36184.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
