Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf1328 domain-containing protein | APT59_RS21985 | Not Available | Positive | 110154 - 110315 | 5717.46 |
| hlyd family secretion protein | APT59_RS00510 | Not Available | Negative | 110631 - 111530 | 33269.0 |
| duf1656 domain-containing protein | APT59_RS00515 | Not Available | Negative | 111541 - 111741 | 7425.54 |
| fusc family protein | APT59_RS00520 | Not Available | Negative | 111731 - 113887 | 78079.0 |
| efflux transporter outer membrane subunit | APT59_RS00525 | Not Available | Negative | 113884 - 115386 | 53699.4 |
| lysr family transcriptional regulator | APT59_RS00530 | Not Available | Positive | 115630 - 116583 | 35037.9 |
| dmt family transporter | APT59_RS00535 | Not Available | Positive | 116826 - 117815 | 34925.8 |
| 4-hydroxybenzoate octaprenyltransferase | APT59_RS00540 | Not Available | Negative | 117800 - 118747 | 34699.8 |
| chorismate lyase | APT59_RS00545 | Not Available | Negative | 118778 - 119380 | 21797.7 |
| duf2780 domain-containing protein | APT59_RS00550 | Not Available | Negative | 119364 - 119933 | 18845.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
