Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sugar abc transporter atp-binding protein | APT59_RS00460 | Not Available | Negative | 98315 - 99820 | 53269.2 |
| sugar abc transporter substrate-binding protein | APT59_RS00465 | Not Available | Negative | 99924 - 100856 | 32325.0 |
| abc transporter permease | APT59_RS00470 | Not Available | Negative | 100913 - 101866 | 33018.8 |
| transketolase | APT59_RS00475 | Not Available | Positive | 102245 - 103081 | 30545.2 |
| transketolase family protein | APT59_RS00480 | Not Available | Positive | 103071 - 104027 | 32853.5 |
| fggy family carbohydrate kinase | APT59_RS00485 | Not Available | Positive | 104068 - 105540 | 51869.0 |
| atp-binding protein | APT59_RS00490 | Not Available | Negative | 106056 - 107846 | 66162.0 |
| sigma-54-dependent response regulator transcription factor algb | APT59_RS00495 | Not Available | Negative | 107843 - 109192 | 49216.9 |
| hypothetical protein | APT59_RS00500 | Not Available | Positive | 109635 - 109889 | 8874.81 |
| hypothetical protein | APT59_RS00505 | Not Available | Positive | 109900 - 110124 | 8152.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
