Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| no-inducible flavohemoprotein | APT59_RS00310 | Not Available | Positive | 64513 - 65682 | 42760.3 |
| duf1161 domain-containing protein | APT59_RS00315 | Not Available | Negative | 65770 - 65997 | 7713.31 |
| dodecin | APT59_RS00320 | Not Available | Negative | 66038 - 66253 | 7930.32 |
| yqjd family protein | APT59_RS00325 | Not Available | Positive | 66475 - 66798 | 11581.5 |
| lysr family transcriptional regulator | APT59_RS00330 | Not Available | Negative | 66838 - 67734 | 32484.1 |
| tryptophan synthase subunit beta | APT59_RS00335 | Not Available | Positive | 67827 - 69035 | 43858.6 |
| tryptophan synthase subunit alpha | APT59_RS00340 | Not Available | Positive | 69032 - 69838 | 28295.9 |
| duf2141 domain-containing protein | APT59_RS00345 | Not Available | Negative | 70569 - 70979 | 14766.7 |
| had hydrolase-like protein | APT59_RS00350 | Not Available | Negative | 70990 - 71622 | 23053.8 |
| methyl-accepting chemotaxis protein | APT59_RS00355 | Not Available | Negative | 71720 - 73345 | 58010.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
