Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gamma carbonic anhydrase family protein | APT59_RS00260 | Not Available | Negative | 53496 - 54047 | 19561.5 |
| oligopeptidase a | APT59_RS00265 | Not Available | Positive | 54092 - 56188 | 77887.5 |
| yhev family putative zinc ribbon protein | APT59_RS00270 | Not Available | Positive | 56185 - 56457 | 10068.1 |
| anti-virulence regulator cigr family protein | APT59_RS00275 | Not Available | Positive | 56826 - 57290 | 16016.5 |
| lactonase family protein | APT59_RS00280 | Not Available | Positive | 57573 - 58739 | 41962.6 |
| voc family protein | APT59_RS00285 | Not Available | Positive | 58898 - 59287 | 14724.4 |
| choline sulfate utilization transcriptional regulator | APT59_RS00290 | Not Available | Negative | 59297 - 60283 | 36651.2 |
| choline-sulfatase | APT59_RS00295 | Not Available | Positive | 60402 - 61901 | 56771.1 |
| choline abc transporter substrate-binding protein | APT59_RS00300 | Not Available | Positive | 61921 - 62838 | 32929.4 |
| nitric oxide reductase transcriptional regulator norr | APT59_RS00305 | Not Available | Negative | 62842 - 64380 | 55702.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
