Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptide deformylase | APT59_RS00210 | Not Available | Negative | 42394 - 42900 | 19189.1 |
| lysm peptidoglycan-binding domain-containing protein | APT59_RS00215 | Not Available | Positive | 43130 - 44161 | 37600.2 |
| dna-processing protein dpra | APT59_RS00220 | Not Available | Positive | 44213 - 45298 | 37996.8 |
| l-threonylcarbamoyladenylate synthase | APT59_RS00225 | Not Available | Positive | 45363 - 45917 | 20363.9 |
| pas domain s-box protein | APT59_RS00230 | Not Available | Negative | 45972 - 49355 | 124988.0 |
| nadph:quinone reductase | APT59_RS00235 | Not Available | Negative | 49514 - 50491 | 34597.5 |
| oxygen-dependent coproporphyrinogen oxidase | APT59_RS00240 | Not Available | Positive | 50608 - 51537 | 34803.9 |
| shikimate dehydrogenase | APT59_RS00245 | Not Available | Positive | 51542 - 52357 | 28969.7 |
| hypothetical protein | APT59_RS00250 | Not Available | Negative | 52461 - 52886 | 15410.1 |
| merr family transcriptional regulator | APT59_RS00255 | Not Available | Positive | 52958 - 53308 | 13308.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
