Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 1-acyl-sn-glycerol-3-phosphate acyltransferase | APT59_RS00160 | Not Available | Negative | 33112 - 33861 | 27617.9 |
| d-glycero-beta-d-manno-heptose 1,7-bisphosphate 7-phosphatase | APT59_RS00165 | Not Available | Negative | 33861 - 34403 | 19437.2 |
| glycine--trna ligase subunit beta | APT59_RS00170 | Not Available | Negative | 34407 - 36464 | 74339.2 |
| glycine--trna ligase subunit alpha | APT59_RS00175 | Not Available | Negative | 36464 - 37429 | 36603.3 |
| dna-3-methyladenine glycosylase i | APT59_RS00180 | Not Available | Positive | 37771 - 38355 | 22224.7 |
| lysophospholipid acyltransferase | APT59_RS00185 | Not Available | Positive | 38446 - 39333 | 33001.4 |
| pilz domain-containing protein | APT59_RS00190 | Not Available | Positive | 39501 - 39773 | 10191.3 |
| tetratricopeptide repeat protein | APT59_RS00195 | Not Available | Negative | 39764 - 40081 | 11399.6 |
| 16s rrna (cytosine(967)-c(5))-methyltransferase rsmb | APT59_RS00200 | Not Available | Negative | 40093 - 41394 | 46865.6 |
| methionyl-trna formyltransferase | APT59_RS00205 | Not Available | Negative | 41391 - 42335 | 33153.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
