Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| f0f1 atp synthase subunit gamma | APT59_RS00065 | Not Available | Negative | 12067 - 12930 | 31021.7 |
| f0f1 atp synthase subunit alpha | APT59_RS00070 | Not Available | Negative | 12979 - 14523 | 55190.3 |
| f0f1 atp synthase subunit delta | APT59_RS00075 | Not Available | Negative | 14542 - 15078 | 19136.7 |
| f0f1 atp synthase subunit b | APT59_RS00080 | Not Available | Negative | 15091 - 15561 | 16862.2 |
| f0f1 atp synthase subunit c | APT59_RS00085 | Not Available | Negative | 15617 - 15874 | 8609.06 |
| f0f1 atp synthase subunit a | APT59_RS00090 | Not Available | Negative | 16013 - 16876 | 31754.7 |
| f0f1 atp synthase subunit i | APT59_RS00095 | Not Available | Negative | 16893 - 17297 | 14519.3 |
| parb/repb/spo0j family partition protein | APT59_RS00100 | Not Available | Negative | 17444 - 18316 | 31781.7 |
| para family protein | APT59_RS00105 | Not Available | Negative | 18326 - 19120 | 28547.6 |
| 16s rrna (guanine(527)-n(7))-methyltransferase rsmg | APT59_RS00110 | Not Available | Negative | 19129 - 19773 | 23353.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
