Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Hypothetical protein | APT59_RS11170 | Not Available | Positive | 2410802 - 2411158 | 13124.6 |
| hypothetical protein | APT59_RS11175 | Not Available | Positive | 2411233 - 2411472 | 9157.97 |
| Toprim domain-containing protein | APT59_RS11180 | Not Available | Positive | 2411475 - 2414312 | 107924.0 |
| hypothetical protein | APT59_RS11185 | Not Available | Positive | 2414384 - 2414626 | 8564.34 |
| Attr | Not Available | Not Available | Positive | 2414525 - 2414539 | Not Available |
| Putative transcriptional regulator | APT59_RS11190 | Not Available | Positive | 2414623 - 2414892 | 10032.2 |
| Putative integrase | APT59_RS11195 | Not Available | Negative | 2414889 - 2416007 | 42876.3 |
| trna dihydrouridine(20/20a) synthase dusa | APT59_RS11200 | Not Available | Positive | 2416110 - 2417120 | 37535.0 |
| Talc | APT59_RS11205 | Not Available | Positive | 2417168 - 2418094 | 33832.2 |
| sdr family nad(p)-dependent oxidoreductase | APT59_RS00010 | Not Available | Positive | 390 - 1148 | 26572.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
