Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Dna polymerase | APT59_RS11130 | Not Available | Negative | 2405122 - 2405526 | 14899.8 |
| imm45 family immunity protein | APT59_RS22180 | Not Available | Positive | 2405682 - 2405972 | 10797.9 |
| Tail protein | APT59_RS11135 | Not Available | Positive | 2406004 - 2406234 | 8773.53 |
| hypothetical protein | APT59_RS22435 | Not Available | Positive | 2406392 - 2407168 | 29094.7 |
| duf4238 domain-containing protein | APT59_RS11140 | Not Available | Negative | 2407324 - 2408415 | 42654.2 |
| hypothetical protein | APT59_RS11145 | Not Available | Negative | 2408840 - 2409064 | 8319.21 |
| Helix-turn-helix transcriptional regulator | APT59_RS11150 | Not Available | Negative | 2409187 - 2409537 | 12552.9 |
| Dna-binding protein | APT59_RS11155 | Not Available | Positive | 2409619 - 2409867 | 8912.71 |
| Hypothetical protein | APT59_RS11160 | Not Available | Positive | 2409864 - 2410346 | 17755.3 |
| Putative bacteriophage transcriptional activator | APT59_RS11165 | Not Available | Positive | 2410452 - 2410805 | 13043.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
