Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sensor histidine kinase | APT59_RS04410 | Not Available | Positive | 971251 - 972654 | 50645.7 |
| hdod domain-containing protein | APT59_RS04415 | Not Available | Negative | 972656 - 973483 | 30115.4 |
| folate-binding protein ygfz | APT59_RS04420 | Not Available | Negative | 973523 - 974440 | 32850.3 |
| succinate dehydrogenase assembly factor 2 | APT59_RS04425 | Not Available | Positive | 974563 - 974820 | 10131.2 |
| protein ygfx | APT59_RS04430 | Not Available | Positive | 974804 - 975256 | 17316.3 |
| l-aspartate oxidase | APT59_RS04435 | Not Available | Negative | 975213 - 976835 | 59268.5 |
| rna polymerase sigma factor rpoe | APT59_RS04440 | Not Available | Positive | 977166 - 977747 | 22238.3 |
| sigma-e factor negative regulatory protein | APT59_RS04445 | Not Available | Positive | 977781 - 978308 | 18586.9 |
| degq family serine endoprotease | APT59_RS04450 | Not Available | Positive | 978530 - 979954 | 50114.3 |
| translation elongation factor 4 | APT59_RS04455 | Not Available | Positive | 980103 - 981902 | 66012.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
