Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lipopolysaccharide kinase inaa family protein | APT59_RS04285 | Not Available | Positive | 939293 - 940024 | 28399.2 |
| lipopolysaccharide kinase inaa family protein | APT59_RS04290 | Not Available | Positive | 940021 - 940776 | 29068.7 |
| phosphotransferase | APT59_RS04295 | Not Available | Positive | 940773 - 942194 | 52543.5 |
| carbamoyltransferase | APT59_RS04300 | Not Available | Positive | 942381 - 944123 | 64994.0 |
| glycosyltransferase | APT59_RS04305 | Not Available | Positive | 944120 - 945253 | 41643.5 |
| glycosyltransferase | APT59_RS04310 | Not Available | Positive | 945250 - 946209 | 36879.9 |
| glycosyltransferase family 2 protein | APT59_RS22070 | Not Available | Positive | 946218 - 947105 | 33220.2 |
| toluene tolerance protein | APT59_RS22075 | Not Available | Negative | 947097 - 947672 | 21967.3 |
| o-antigen ligase family protein | APT59_RS22080 | Not Available | Positive | 947720 - 948907 | 45255.5 |
| hypothetical protein | APT59_RS22355 | Not Available | Negative | 948873 - 949931 | 40646.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
