Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Tail sheath protein | APT59_RS11100 | Not Available | Positive | 2396603 - 2397769 | 42079.8 |
| Major tail tube protein | APT59_RS11105 | Not Available | Positive | 2397818 - 2398333 | 18271.0 |
| Phage tail protein e | APT59_RS11110 | Not Available | Positive | 2398391 - 2398696 | 10882.2 |
| Gpe familygtail protein | APT59_RS22175 | Not Available | Positive | 2398705 - 2398824 | 4592.43 |
| Tail tape measure protein | APT59_RS11115 | Not Available | Positive | 2398814 - 2401411 | 91094.8 |
| Tail protein | APT59_RS11120 | Not Available | Positive | 2401417 - 2401860 | 16051.4 |
| Tail protein | APT59_RS11125 | Not Available | Positive | 2401857 - 2403128 | 46477.0 |
| arsenical resistance protein arsh | APT59_RS22725 | Not Available | Positive | 2403153 - 2403271 | 3905.6 |
| hypothetical protein | APT59_RS22425 | Not Available | Positive | 2403571 - 2404374 | 30470.2 |
| hypothetical protein | APT59_RS22430 | Not Available | Positive | 2404367 - 2405074 | 26725.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
