Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Alteromonadales
Family
Shewanellaceae
Genus
Shewanella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Alteromonadales |
| Family | Shewanellaceae |
| Genus | Shewanella |
| Species | Shewanella benthica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | deep-sea; deepsea; Mariana Trench's Challenger Deep; Tonga-Kermadec subduction zone |
| Biotic relationship | Not Available |
| Host(s) | Amphipoda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1175565 bp
Thymine Count
1181310 bp
Guanine Count
994413 bp
Cytosine Count
1002217 bp
Genome Length
4353505 bp
Protein-coding Genes
3730 genes
Non-Coding Genes
174 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-his | Not Available | Not Available | Positive | 12559 - 12634 | Not Available |
| Trna-arg | Not Available | Not Available | Positive | 12690 - 12766 | Not Available |
| diguanylate cyclase domain-containing protein | SHEWBE_RS00060 | Not Available | Positive | 13014 - 15644 | 99665.0 |
| dna helicase rep | SHEWBE_RS00065 | Not Available | Negative | 15715 - 17727 | 76762.2 |
| hypothetical protein | SHEWBE_RS20110 | Not Available | Positive | 17877 - 18110 | 9016.64 |
| hypothetical protein | SHEWBE_RS20115 | Not Available | Positive | 18091 - 18303 | 7960.61 |
| ubiquinone biosynthesis accessory factor ubik | SHEWBE_RS00075 | Not Available | Positive | 18465 - 18725 | 9937.88 |
| duf417 family protein | SHEWBE_RS00080 | Not Available | Negative | 18801 - 19649 | 30782.8 |
| hypothetical protein | SHEWBE_RS19885 | Not Available | Positive | 20368 - 20772 | 15191.3 |
| pyridoxal-phosphate-dependent aminotransferase family protein | SHEWBE_RS00090 | Not Available | Negative | 20819 - 21961 | 41013.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
