Rhodococcus opacus str. R7

Gram-positiveCocciNon-motileAerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Rhodococcus

Description

Rhodococcus opacus strain R7 is a Gram-positive bacterium characterized by its cocci shape and filamentous cell arrangement. This microbe requires oxygen for growth, classifying it as an aerobic organism. The structural properties of R. opacus str. R7, particularly its filamentous arrangement, may confer advantages in nutrient acquisition and colonization in various environments. R. opacus species are known for their metabolic versatility, including the ability to degrade a range of organic compounds, which suggests potential applications in bioremediation processes. While the specific biochemical pathways utilized by strain R7 are not detailed here, the broader genus is recognized for its capacity to metabolize hydrocarbons and other complex organic molecules. This trait may enable R. opacus str. R7 to thrive in environments impacted by anthropogenic activities, such as contaminated soils or waste sites. In conclusion, the filamentous arrangement of R. opacus str. R7, coupled with its aerobic metabolism, positions it as a potentially important organism in ecological contexts where organic degradation and nutrient cycling are critical. Further research could elucidate its specific roles in such environments, enhancing our understanding of microbial contributions to ecosystem health and recovery.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus opacus
StrainR7

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Rhodococcus opacus str. R7
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatNot Available
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementFilaments
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodococcus opacus strain R7 plasmid pPDG5.

Gene Summary

Adenine Count

4653 bp

Thymine Count

4737 bp

Guanine Count

7854 bp

Cytosine Count

7931 bp

Genome Length

25175 bp

Protein-coding Genes

24 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

6

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
3-(cis-5,6-dihydroxycyclohexa-1, 3-dien-1-yl)propanoate dehydrogenaseEP51_RS46195Not AvailableNegative56 - 86828496.1
nad(p)/fad-dependent oxidoreductaseEP51_RS46200Not AvailableNegative899 - 216144858.6
scp2 sterol-binding domain-containing proteinEP51_RS46205Not AvailableNegative2447 - 284214683.7
non-heme iron oxygenase ferredoxin subunitEP51_RS46210Not AvailableNegative2922 - 328713006.2
3-phenylpropionate/cinnamic acid dioxygenase subunit betaEP51_RS46215Not AvailableNegative3312 - 386021802.7
srpbcc family proteinEP51_RS46220Not AvailableNegative3883 - 520549857.5
aaa family atpaseEP51_RS46225Not AvailablePositive5648 - 10459175181.0
response regulator transcription factorEP51_RS46230Not AvailablePositive10456 - 1107622754.5
tyrosine-type recombinase/integraseEP51_RS46235Not AvailableNegative11210 - 114609220.87
tyrosine-type recombinase/integraseEP51_RS46240Not AvailableNegative11593 - 1258136909.4

Displaying genes 1 – 10 of 9254 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

58 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm00005992,5-dihydroxypyridineC5H5NO2Chemical structure of 2,5-dihydroxypyridineNot available
Average111.1Da
Monoisotopic111.0320284Da
BASm00006473-hydroxypropanoateC3H5O3Chemical structure of 3-hydroxypropanoateNot available
Average89.071Da
Monoisotopic89.0244176Da
BASm00008763-hydroxypyruvateC3H3O4Chemical structure of 3-hydroxypyruvateNot available
Average103.054Da
Monoisotopic103.003682157Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm0001691hydrogenselenideHSeChemical structure of hydrogenselenideNot available
Average79.98Da
Monoisotopic80.924896Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001767oxalateC2O4Chemical structure of oxalateNot available
Average88.019Da
Monoisotopic87.979658488Da
BASm0001772maleateC4H2O4Chemical structure of maleateNot available
Average114.057Da
Monoisotopic113.996405704Da
BASm0001779orotateC5H3N2O4Chemical structure of orotateNot available
Average155.09Da
Monoisotopic155.0098302Da

Displaying 1–10 of 58 metabolites

Health Effects

No health effects information available for this bacterium.