Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingobiaceae
Genus
Sphingobium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingobiaceae |
| Genus | Sphingobium |
| Species | Sphingobium yanoikuyae |
| Strain | Sphingobium yanoikuyae SJTF8 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
94646 bp
Thymine Count
95472 bp
Guanine Count
157580 bp
Cytosine Count
157630 bp
Genome Length
505328 bp
Protein-coding Genes
508 genes
Non-Coding Genes
15 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gsph/fimt family pseudopilin | EBF16_RS07580 | Not Available | Positive | 756686 - 757093 | 14367.3 |
| type ii secretion system minor pseudopilin gspi | EBF16_RS07585 | Not Available | Positive | 757149 - 757520 | 13276.0 |
| type ii secretion system minor pseudopilin gspj | EBF16_RS07590 | Not Available | Positive | 757520 - 758182 | 23984.7 |
| type ii secretion system minor pseudopilin gspk | EBF16_RS07595 | Not Available | Positive | 758169 - 759164 | 34951.2 |
| type ii secretion system protein gspl | EBF16_RS07600 | Not Available | Positive | 759161 - 760279 | 38696.7 |
| type ii secretion system protein gspm | EBF16_RS07605 | Not Available | Positive | 760276 - 760764 | 17629.7 |
| type ii secretion system protein n | EBF16_RS07610 | Not Available | Positive | 760761 - 761483 | 25596.8 |
| prepilin peptidase | EBF16_RS07615 | Not Available | Positive | 761480 - 762226 | 25643.4 |
| arylesterase | EBF16_RS07620 | Not Available | Negative | 762459 - 763181 | 25230.7 |
| abc transporter atp-binding protein | EBF16_RS07625 | Not Available | Positive | 763180 - 763869 | 23927.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
