Pimelobacter simplex str. VKM Ac-2033D

Rodaerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Propionibacteriales

Family

Nocardioidaceae

Genus

Pimelobacter

Description

Pimelobacter simplex strain VKM Ac-2033D is a Gram-positive, non-sporulating rod-shaped bacterium that thrives in aerobic environments. This microbe has been isolated from diverse habitats, including deteriorated mural paintings, oil-contaminated soil and sea sediment, as well as the rhizosphere and roots of pine trees. The presence of Pimelobacter simplex in oil-contaminated environments suggests a potential role in biodegradation processes, where it may contribute to the breakdown of hydrocarbons. Its association with pine tree rhizospheres indicates possible interactions with plant roots, which may facilitate nutrient exchange or influence microbial community dynamics in forest ecosystems. Overall, the adaptability of Pimelobacter simplex to various environments, particularly those impacted by anthropogenic activities, highlights its potential significance in bioremediation efforts and the maintenance of ecological balance in contaminated sites. Further research into its metabolic pathways could provide insights into its functional roles within these diverse habitats.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderPropionibacteriales
FamilyNocardioidaceae
GenusPimelobacter
SpeciesPimelobacter simplex
StrainVKM Ac-2033D

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatdeteriorated mural paintings; oil contaminated soil; oil-contaminated sea sediment; pine tree rhizosphere; pine tree roots; soil
Biotic relationshipNot Available
Host(s)Homo sapiens, Triticum aestivum, Solanum lycopersicum
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pimelobacter simplex strain VKM Ac-2033D chromosome, complete

Gene Summary

Adenine Count

766420 bp

Thymine Count

764112 bp

Guanine Count

2042448 bp

Cytosine Count

2064380 bp

Genome Length

5637360 bp

Protein-coding Genes

5473 genes

Non-Coding Genes

148 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
5-(carboxyamino)imidazole ribonucleotide mutaseKR76_RS19965Not AvailableNegative4061118 - 406161816837.7
5-(carboxyamino)imidazole ribonucleotide synthaseKR76_RS19970Not AvailableNegative4061640 - 406282742117.2
winged helix-turn-helix domain-containing proteinKR76_RS19975Not AvailableNegative4062855 - 406318112388.9
adenylate/guanylate cyclase domain-containing proteinKR76_RS19980Not AvailableNegative4063275 - 406419533162.8
ph domain-containing proteinKR76_RS19985Not AvailableNegative4064188 - 406470919447.1
biotin--[acetyl-coa-carboxylase] ligaseKR76_RS19990Not AvailableNegative4064755 - 406551926660.6
acyl-coa carboxylase subunit betaKR76_RS19995Not AvailablePositive4065650 - 406726358147.1
acyl-coa carboxylase subunit epsilonKR76_RS20000Not AvailablePositive4067260 - 40674817469.84
epoxide hydrolase family proteinKR76_RS20005Not AvailableNegative4067533 - 406864540945.8
helix-turn-helix transcriptional regulatorKR76_RS20010Not AvailablePositive4068700 - 406971637020.4

Displaying genes 4061 – 4070 of 5621 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

2 records
Metabolite IDMetabolite nameStructureCAS number
BASm0014029(S)-3-Hydroxyisobutyric acidC19H35N5O6SeChemical structure of (S)-3-Hydroxyisobutyric acid26543-05-5
Average508.489Da
Monoisotopic509.175256Da
BASm00174922-MaleylacetateC6H6O5Chemical structure of 2-Maleylacetate24740-88-3
Average158.1088Da
Monoisotopic158.021523302Da

Displaying 1–2 of 2 metabolites

Health Effects

Health ConditionRelationReference
PyonephrosisCausesPMC11729731
Psoas abscessCausesPMC11729731

Displaying health effects 1 – 2 of 2 in total