Pimelobacter simplex str. VKM Ac-2033D

Rodaerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Propionibacteriales

Family

Nocardioidaceae

Genus

Pimelobacter

Description

Pimelobacter simplex strain VKM Ac-2033D is a Gram-positive, non-sporulating rod-shaped bacterium that thrives in aerobic environments. This microbe has been isolated from diverse habitats, including deteriorated mural paintings, oil-contaminated soil and sea sediment, as well as the rhizosphere and roots of pine trees. The presence of Pimelobacter simplex in oil-contaminated environments suggests a potential role in biodegradation processes, where it may contribute to the breakdown of hydrocarbons. Its association with pine tree rhizospheres indicates possible interactions with plant roots, which may facilitate nutrient exchange or influence microbial community dynamics in forest ecosystems. Overall, the adaptability of Pimelobacter simplex to various environments, particularly those impacted by anthropogenic activities, highlights its potential significance in bioremediation efforts and the maintenance of ecological balance in contaminated sites. Further research into its metabolic pathways could provide insights into its functional roles within these diverse habitats.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderPropionibacteriales
FamilyNocardioidaceae
GenusPimelobacter
SpeciesPimelobacter simplex
StrainVKM Ac-2033D

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatdeteriorated mural paintings; oil contaminated soil; oil-contaminated sea sediment; pine tree rhizosphere; pine tree roots; soil
Biotic relationshipNot Available
Host(s)Homo sapiens, Triticum aestivum, Solanum lycopersicum
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pimelobacter simplex strain VKM Ac-2033D chromosome, complete

Gene Summary

Adenine Count

766420 bp

Thymine Count

764112 bp

Guanine Count

2042448 bp

Cytosine Count

2064380 bp

Genome Length

5637360 bp

Protein-coding Genes

5473 genes

Non-Coding Genes

148 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf3618 domain-containing proteinKR76_RS08280Not AvailablePositive1689349 - 16895978996.9
co-chaperone groesKR76_RS30090Not AvailablePositive1689636 - 168993510678.7
mfs transporterKR76_RS30835Not AvailableNegative1690266 - 169132437083.6
amidaseKR76_RS08295Not AvailableNegative1691321 - 169279650808.2
pucr family transcriptional regulatorKR76_RS08300Not AvailableNegative1692834 - 169444156946.4
penicillin acylase family proteinKR76_RS08305Not AvailablePositive1694579 - 169699986545.5
wyl domain-containing proteinKR76_RS08310Not AvailablePositive1697066 - 169802234349.1
helix-turn-helix transcriptional regulatorKR76_RS08315Not AvailablePositive1698019 - 169899935543.1
hypothetical proteinKR76_RS30095Not AvailablePositive1699109 - 16992765845.99
hnh endonuclease signature motif containing proteinKR76_RS08320Not AvailablePositive1699333 - 170061046755.1

Displaying genes 1771 – 1780 of 5621 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

2 records
Metabolite IDMetabolite nameStructureCAS number
BASm0014029(S)-3-Hydroxyisobutyric acidC19H35N5O6SeChemical structure of (S)-3-Hydroxyisobutyric acid26543-05-5
Average508.489Da
Monoisotopic509.175256Da
BASm00174922-MaleylacetateC6H6O5Chemical structure of 2-Maleylacetate24740-88-3
Average158.1088Da
Monoisotopic158.021523302Da

Displaying 1–2 of 2 metabolites

Health Effects

Health ConditionRelationReference
PyonephrosisCausesPMC11729731
Psoas abscessCausesPMC11729731

Displaying health effects 1 – 2 of 2 in total