Pimelobacter simplex str. VKM Ac-2033D

Rodaerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Propionibacteriales

Family

Nocardioidaceae

Genus

Pimelobacter

Description

Pimelobacter simplex strain VKM Ac-2033D is a Gram-positive, non-sporulating rod-shaped bacterium that thrives in aerobic environments. This microbe has been isolated from diverse habitats, including deteriorated mural paintings, oil-contaminated soil and sea sediment, as well as the rhizosphere and roots of pine trees. The presence of Pimelobacter simplex in oil-contaminated environments suggests a potential role in biodegradation processes, where it may contribute to the breakdown of hydrocarbons. Its association with pine tree rhizospheres indicates possible interactions with plant roots, which may facilitate nutrient exchange or influence microbial community dynamics in forest ecosystems. Overall, the adaptability of Pimelobacter simplex to various environments, particularly those impacted by anthropogenic activities, highlights its potential significance in bioremediation efforts and the maintenance of ecological balance in contaminated sites. Further research into its metabolic pathways could provide insights into its functional roles within these diverse habitats.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderPropionibacteriales
FamilyNocardioidaceae
GenusPimelobacter
SpeciesPimelobacter simplex
StrainVKM Ac-2033D

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatdeteriorated mural paintings; oil contaminated soil; oil-contaminated sea sediment; pine tree rhizosphere; pine tree roots; soil
Biotic relationshipNot Available
Host(s)Homo sapiens, Triticum aestivum, Solanum lycopersicum
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pimelobacter simplex strain VKM Ac-2033D chromosome, complete

Gene Summary

Adenine Count

766420 bp

Thymine Count

764112 bp

Guanine Count

2042448 bp

Cytosine Count

2064380 bp

Genome Length

5637360 bp

Protein-coding Genes

5473 genes

Non-Coding Genes

148 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
flagellar biosynthetic protein flioKR76_RS27895Not AvailableNegative1060826 - 106127215407.7
flagellar motor switch protein flinKR76_RS05270Not AvailableNegative1061278 - 106210226750.0
flagellar motor switch protein flimKR76_RS05275Not AvailableNegative1062102 - 106301933148.8
flagellar basal body-associated protein flilKR76_RS05280Not AvailableNegative1063138 - 106357215244.5
flagellar motor protein motbKR76_RS05285Not AvailableNegative1063569 - 106459137594.8
motility protein aKR76_RS05290Not AvailableNegative1064591 - 106536126997.2
flagellar flbd family proteinKR76_RS05295Not AvailableNegative1065358 - 10656339525.58
flagellar hook-basal body complex proteinKR76_RS05300Not AvailableNegative1065716 - 106655828981.3
flagellar hook assembly protein flgdKR76_RS27900Not AvailableNegative1066600 - 106709717262.2
flagellar hook-length control protein flikKR76_RS05310Not AvailableNegative1067107 - 106824637718.9

Displaying genes 1161 – 1170 of 5621 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

2 records
Metabolite IDMetabolite nameStructureCAS number
BASm0014029(S)-3-Hydroxyisobutyric acidC19H35N5O6SeChemical structure of (S)-3-Hydroxyisobutyric acid26543-05-5
Average508.489Da
Monoisotopic509.175256Da
BASm00174922-MaleylacetateC6H6O5Chemical structure of 2-Maleylacetate24740-88-3
Average158.1088Da
Monoisotopic158.021523302Da

Displaying 1–2 of 2 metabolites

Health Effects

Health ConditionRelationReference
PyonephrosisCausesPMC11729731
Psoas abscessCausesPMC11729731

Displaying health effects 1 – 2 of 2 in total