Rhodococcus ruber str. YYL

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Rhodococcus

Description

Rhodococcus ruber strain YYL is a Gram-positive bacterium predominantly found in soil environments. This microbe is part of the diverse Rhodococcus genus, known for its robust metabolic capabilities and adaptability to various ecological niches. As a soil-dwelling organism, R. ruber str. YYL contributes to the microbial community dynamics and plays a role in nutrient cycling, particularly in the degradation of organic compounds. The Gram-positive nature of R. ruber str. YYL suggests a thick peptidoglycan layer in its cell wall, which may provide structural integrity and protection against environmental stresses. This trait is characteristic of many soil bacteria, enabling them to thrive in fluctuating conditions commonly encountered in terrestrial habitats. Rhodococcus species are also noted for their potential in bioremediation applications, owing to their enzymatic capabilities that allow them to degrade a wide range of pollutants. While the specific metabolic pathways of R. ruber str. YYL are not detailed here, the strain likely exhibits similar versatility, reflecting the broader functional traits observed in the genus. Overall, the ecological role of R. ruber str. YYL in soil environments may extend beyond nutrient cycling to include interactions with other soil microorganisms, thereby influencing soil health and ecosystem resilience. Understanding the specific contributions of this strain to soil microbiomes could provide insights into its potential applications in environmental biotechnology and sustainable agriculture.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus ruber
StrainYYL

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatSoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence.

Gene Summary

Adenine Count

38842 bp

Thymine Count

39959 bp

Guanine Count

78903 bp

Cytosine Count

78650 bp

Genome Length

236354 bp

Protein-coding Genes

211 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
uridine diphosphate-n-acetylglucosamine-binding protein yvckCSW53_RS01025Not AvailableNegative246059 - 24711436426.6
rnase adapter rapzCSW53_RS01030Not AvailableNegative247111 - 24796531095.0
excinuclease abc subunit uvrcCSW53_RS01035Not AvailableNegative248037 - 25029882096.6
ph domain-containing proteinCSW53_RS01040Not AvailableNegative250308 - 25078116714.4
6,7-dimethyl-8-ribityllumazine synthaseCSW53_RS01045Not AvailableNegative250778 - 25126016477.6
bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/gtp cyclohydrolase iiCSW53_RS01050Not AvailableNegative251261 - 25251145172.8
riboflavin synthaseCSW53_RS01055Not AvailableNegative252572 - 25318021038.9
bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase ribdCSW53_RS01060Not AvailableNegative253193 - 25423635403.1
ribulose-phosphate 3-epimeraseCSW53_RS01065Not AvailableNegative254233 - 25491623946.5
phosphoenolpyruvate synthaseCSW53_RS01070Not AvailablePositive255089 - 25736880671.8

Displaying genes 661 – 670 of 5576 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.