Rhodococcus ruber str. YYL

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Rhodococcus

Description

Rhodococcus ruber strain YYL is a Gram-positive bacterium predominantly found in soil environments. This microbe is part of the diverse Rhodococcus genus, known for its robust metabolic capabilities and adaptability to various ecological niches. As a soil-dwelling organism, R. ruber str. YYL contributes to the microbial community dynamics and plays a role in nutrient cycling, particularly in the degradation of organic compounds. The Gram-positive nature of R. ruber str. YYL suggests a thick peptidoglycan layer in its cell wall, which may provide structural integrity and protection against environmental stresses. This trait is characteristic of many soil bacteria, enabling them to thrive in fluctuating conditions commonly encountered in terrestrial habitats. Rhodococcus species are also noted for their potential in bioremediation applications, owing to their enzymatic capabilities that allow them to degrade a wide range of pollutants. While the specific metabolic pathways of R. ruber str. YYL are not detailed here, the strain likely exhibits similar versatility, reflecting the broader functional traits observed in the genus. Overall, the ecological role of R. ruber str. YYL in soil environments may extend beyond nutrient cycling to include interactions with other soil microorganisms, thereby influencing soil health and ecosystem resilience. Understanding the specific contributions of this strain to soil microbiomes could provide insights into its potential applications in environmental biotechnology and sustainable agriculture.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus ruber
StrainYYL

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatSoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence.

Gene Summary

Adenine Count

38842 bp

Thymine Count

39959 bp

Guanine Count

78903 bp

Cytosine Count

78650 bp

Genome Length

236354 bp

Protein-coding Genes

211 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rhodanese-like domain-containing proteinCSW53_RS24275Not AvailablePositive5222774 - 522311512169.3
duf4328 domain-containing proteinCSW53_RS24280Not AvailablePositive5223115 - 522410135654.5
glycerophosphodiester phosphodiesteraseCSW53_RS24285Not AvailablePositive5224098 - 522487127656.1
duf5926 family proteinCSW53_RS24290Not AvailablePositive5224881 - 522579532520.4
lcp family proteinCSW53_RS24295Not AvailableNegative5225835 - 522706743698.1
cpbp family intramembrane glutamic endopeptidaseCSW53_RS24305Not AvailableNegative5227216 - 522801928973.7
hypothetical proteinCSW53_RS24310Not AvailablePositive5228289 - 52285588872.21
kelch repeat-containing proteinCSW53_RS24315Not AvailableNegative5228650 - 5231670105208.0
duf2470 domain-containing proteinCSW53_RS24320Not AvailableNegative5231736 - 523254228385.0
hypothetical proteinCSW53_RS24325Not AvailablePositive5232649 - 523332322750.3

Displaying genes 5141 – 5150 of 5576 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.