Rhodococcus ruber str. YYL

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Rhodococcus

Description

Rhodococcus ruber strain YYL is a Gram-positive bacterium predominantly found in soil environments. This microbe is part of the diverse Rhodococcus genus, known for its robust metabolic capabilities and adaptability to various ecological niches. As a soil-dwelling organism, R. ruber str. YYL contributes to the microbial community dynamics and plays a role in nutrient cycling, particularly in the degradation of organic compounds. The Gram-positive nature of R. ruber str. YYL suggests a thick peptidoglycan layer in its cell wall, which may provide structural integrity and protection against environmental stresses. This trait is characteristic of many soil bacteria, enabling them to thrive in fluctuating conditions commonly encountered in terrestrial habitats. Rhodococcus species are also noted for their potential in bioremediation applications, owing to their enzymatic capabilities that allow them to degrade a wide range of pollutants. While the specific metabolic pathways of R. ruber str. YYL are not detailed here, the strain likely exhibits similar versatility, reflecting the broader functional traits observed in the genus. Overall, the ecological role of R. ruber str. YYL in soil environments may extend beyond nutrient cycling to include interactions with other soil microorganisms, thereby influencing soil health and ecosystem resilience. Understanding the specific contributions of this strain to soil microbiomes could provide insights into its potential applications in environmental biotechnology and sustainable agriculture.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus ruber
StrainYYL

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatSoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence.

Gene Summary

Adenine Count

38842 bp

Thymine Count

39959 bp

Guanine Count

78903 bp

Cytosine Count

78650 bp

Genome Length

236354 bp

Protein-coding Genes

211 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
fusc family proteinCSW53_RS16900Not AvailableNegative3659459 - 366060440324.5
duf3151 domain-containing proteinCSW53_RS16905Not AvailableNegative3660591 - 366100714962.4
hypothetical proteinCSW53_RS16910Not AvailablePositive3661088 - 366208934347.8
class ii fructose-bisphosphate aldolaseCSW53_RS16915Not AvailableNegative3662200 - 366323736465.2
vtt domain-containing proteinCSW53_RS16920Not AvailablePositive3663389 - 366420428992.7
deda family proteinCSW53_RS16925Not AvailablePositive3664228 - 366489323934.8
gtp-binding proteinCSW53_RS16930Not AvailableNegative3665023 - 366606937707.6
glycoside hydrolase family 76 proteinCSW53_RS16935Not AvailableNegative3666087 - 366724743124.5
trmh family rna methyltransferaseCSW53_RS16940Not AvailableNegative3667324 - 366798924406.6
hypothetical proteinCSW53_RS16945Not AvailableNegative3667992 - 366860320266.3

Displaying genes 3741 – 3750 of 5576 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.