Rhodococcus ruber str. YYL

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Rhodococcus

Description

Rhodococcus ruber strain YYL is a Gram-positive bacterium predominantly found in soil environments. This microbe is part of the diverse Rhodococcus genus, known for its robust metabolic capabilities and adaptability to various ecological niches. As a soil-dwelling organism, R. ruber str. YYL contributes to the microbial community dynamics and plays a role in nutrient cycling, particularly in the degradation of organic compounds. The Gram-positive nature of R. ruber str. YYL suggests a thick peptidoglycan layer in its cell wall, which may provide structural integrity and protection against environmental stresses. This trait is characteristic of many soil bacteria, enabling them to thrive in fluctuating conditions commonly encountered in terrestrial habitats. Rhodococcus species are also noted for their potential in bioremediation applications, owing to their enzymatic capabilities that allow them to degrade a wide range of pollutants. While the specific metabolic pathways of R. ruber str. YYL are not detailed here, the strain likely exhibits similar versatility, reflecting the broader functional traits observed in the genus. Overall, the ecological role of R. ruber str. YYL in soil environments may extend beyond nutrient cycling to include interactions with other soil microorganisms, thereby influencing soil health and ecosystem resilience. Understanding the specific contributions of this strain to soil microbiomes could provide insights into its potential applications in environmental biotechnology and sustainable agriculture.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus ruber
StrainYYL

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatSoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence.

Gene Summary

Adenine Count

38842 bp

Thymine Count

39959 bp

Guanine Count

78903 bp

Cytosine Count

78650 bp

Genome Length

236354 bp

Protein-coding Genes

211 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinCSW53_RS03745Not AvailablePositive829699 - 83011815726.4
duf3817 domain-containing proteinCSW53_RS03750Not AvailablePositive830115 - 83050114126.2
rdgb/ham1 family non-canonical purine ntp pyrophosphataseCSW53_RS03755Not AvailableNegative830643 - 83126021444.1
ribonuclease phCSW53_RS03760Not AvailableNegative831262 - 83205027810.2
cyclic nucleotide-degrading phosphodiesteraseCSW53_RS03765Not AvailableNegative832064 - 83282526569.3
rhomboid family intramembrane serine proteaseCSW53_RS03770Not AvailableNegative832950 - 83357622038.1
hypothetical proteinCSW53_RS27800Not AvailablePositive833733 - 8338855465.52
p1 family peptidaseCSW53_RS03775Not AvailableNegative833891 - 83499736143.9
duf2017 domain-containing proteinCSW53_RS03780Not AvailableNegative834994 - 83557220778.5
atp-dependent clp protease adapter clpsCSW53_RS03785Not AvailableNegative835628 - 83601113884.5

Displaying genes 1211 – 1220 of 5576 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.