Rhodococcus ruber str. R1

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Rhodococcus

Description

Rhodococcus ruber str. R1 is a Gram-positive bacterium commonly found in soil environments. This microorganism is characterized by its ability to degrade various organic compounds, which contributes to its ecological role in the biogeochemical cycling of nutrients within terrestrial ecosystems. As a member of the genus Rhodococcus, R. ruber str. R1 exhibits notable metabolic versatility, enabling it to utilize a range of substrates for growth. This adaptability not only facilitates its survival in diverse soil conditions but also positions it as a potential candidate for bioremediation applications, especially in the breakdown of pollutants. The presence of R. ruber str. R1 in soil highlights its significance in maintaining soil health and fertility, as its metabolic activities can enhance the availability of nutrients for other soil organisms. Furthermore, the bacterium's interactions with other microbial communities may influence soil structure and function, thereby playing a crucial role in the ecosystem dynamics of soil habitats. Understanding the ecological functions of R. ruber str. R1 could provide insights into its potential applications in sustainable agricultural practices and environmental management strategies.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus ruber
StrainR1

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatSoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodococcus ruber strain R1 plasmid unnamed2, complete sequence.

Gene Summary

Adenine Count

4793 bp

Thymine Count

5098 bp

Guanine Count

11390 bp

Cytosine Count

11735 bp

Genome Length

33016 bp

Protein-coding Genes

33 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
meromycolate extension acyl carrier protein acpmE2561_RS14155Not AvailablePositive3144717 - 31449959928.51
kasa/kasb family beta-ketoacyl-acp synthaseE2561_RS14160Not AvailablePositive3145004 - 314625142532.6
acyl-coa carboxylase subunit betaE2561_RS14165Not AvailablePositive3146351 - 314778450391.5
duf3145 domain-containing proteinE2561_RS14170Not AvailableNegative3147855 - 314836418281.6
serine hydrolase domain-containing proteinE2561_RS14175Not AvailableNegative3148468 - 314929829360.6
ndma-dependent alcohol dehydrogenaseE2561_RS14180Not AvailableNegative3149336 - 315046339857.4
hypothetical proteinE2561_RS14185Not AvailablePositive3150719 - 31509227143.85
mbl fold metallo-hydrolaseE2561_RS14190Not AvailablePositive3151198 - 315280258502.1
class i sam-dependent methyltransferaseE2561_RS14195Not AvailableNegative3153029 - 315386830236.9
sigma-70 family rna polymerase sigma factorE2561_RS14200Not AvailablePositive3154059 - 315469423175.4

Displaying genes 2901 – 2910 of 4944 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.