Rhodococcus ruber str. R1

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Rhodococcus

Description

Rhodococcus ruber str. R1 is a Gram-positive bacterium commonly found in soil environments. This microorganism is characterized by its ability to degrade various organic compounds, which contributes to its ecological role in the biogeochemical cycling of nutrients within terrestrial ecosystems. As a member of the genus Rhodococcus, R. ruber str. R1 exhibits notable metabolic versatility, enabling it to utilize a range of substrates for growth. This adaptability not only facilitates its survival in diverse soil conditions but also positions it as a potential candidate for bioremediation applications, especially in the breakdown of pollutants. The presence of R. ruber str. R1 in soil highlights its significance in maintaining soil health and fertility, as its metabolic activities can enhance the availability of nutrients for other soil organisms. Furthermore, the bacterium's interactions with other microbial communities may influence soil structure and function, thereby playing a crucial role in the ecosystem dynamics of soil habitats. Understanding the ecological functions of R. ruber str. R1 could provide insights into its potential applications in sustainable agricultural practices and environmental management strategies.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus ruber
StrainR1

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatSoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodococcus ruber strain R1 plasmid unnamed2, complete sequence.

Gene Summary

Adenine Count

4793 bp

Thymine Count

5098 bp

Guanine Count

11390 bp

Cytosine Count

11735 bp

Genome Length

33016 bp

Protein-coding Genes

33 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nad(p)-dependent alcohol dehydrogenaseE2561_RS13085Not AvailableNegative2907322 - 290827532551.0
tetr/acrr family transcriptional regulatorE2561_RS13090Not AvailablePositive2908356 - 290900623622.3
acyl-coa thioesteraseE2561_RS13095Not AvailableNegative2909067 - 290993932183.3
pyruvate kinaseE2561_RS13100Not AvailableNegative2909936 - 291135751264.6
merr family transcriptional regulatorE2561_RS13105Not AvailablePositive2911647 - 291208116025.7
dna starvation/stationary phase protection protein dpsE2561_RS13110Not AvailableNegative2912150 - 291268919560.8
alpha,alpha-trehalose-phosphate synthase (udp-forming)E2561_RS13115Not AvailablePositive2913096 - 291453852639.6
cytochrome p450E2561_RS13120Not AvailablePositive2914631 - 291600449638.2
hypothetical proteinE2561_RS25305Not AvailableNegative2916154 - 29163185700.52
srpbcc family proteinE2561_RS13125Not AvailableNegative2916315 - 291677617354.2

Displaying genes 2681 – 2690 of 4944 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.