Rhodococcus ruber str. R1

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Rhodococcus

Description

Rhodococcus ruber str. R1 is a Gram-positive bacterium commonly found in soil environments. This microorganism is characterized by its ability to degrade various organic compounds, which contributes to its ecological role in the biogeochemical cycling of nutrients within terrestrial ecosystems. As a member of the genus Rhodococcus, R. ruber str. R1 exhibits notable metabolic versatility, enabling it to utilize a range of substrates for growth. This adaptability not only facilitates its survival in diverse soil conditions but also positions it as a potential candidate for bioremediation applications, especially in the breakdown of pollutants. The presence of R. ruber str. R1 in soil highlights its significance in maintaining soil health and fertility, as its metabolic activities can enhance the availability of nutrients for other soil organisms. Furthermore, the bacterium's interactions with other microbial communities may influence soil structure and function, thereby playing a crucial role in the ecosystem dynamics of soil habitats. Understanding the ecological functions of R. ruber str. R1 could provide insights into its potential applications in sustainable agricultural practices and environmental management strategies.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus ruber
StrainR1

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatSoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodococcus ruber strain R1 plasmid unnamed2, complete sequence.

Gene Summary

Adenine Count

4793 bp

Thymine Count

5098 bp

Guanine Count

11390 bp

Cytosine Count

11735 bp

Genome Length

33016 bp

Protein-coding Genes

33 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nadh-quinone oxidoreductase subunit nuoiE2561_RS12790Not AvailableNegative2838659 - 283926422059.7
nadh-quinone oxidoreductase subunit nuohE2561_RS12795Not AvailableNegative2839257 - 284060948584.0
nadh-quinone oxidoreductase subunit gE2561_RS12800Not AvailableNegative2840653 - 284312486975.8
nadh-quinone oxidoreductase subunit nuofE2561_RS12805Not AvailableNegative2843121 - 284444647637.5
nadh-quinone oxidoreductase subunit nuoeE2561_RS12810Not AvailableNegative2844448 - 284532030509.9
nadh dehydrogenase (quinone) subunit dE2561_RS12815Not AvailableNegative2845317 - 284663048227.3
nadh-quinone oxidoreductase subunit cE2561_RS12820Not AvailableNegative2846627 - 284738528034.6
nuob/complex i 20 kda subunit family proteinE2561_RS12825Not AvailableNegative2847382 - 284794220173.0
nadh-quinone oxidoreductase subunit aE2561_RS12830Not AvailableNegative2848026 - 284838513111.2
response regulator transcription factorE2561_RS12835Not AvailableNegative2848652 - 284907415004.9

Displaying genes 2621 – 2630 of 4944 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.